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CellRegMap: a statistical framework for mapping context‐specific regulatory variants using scRNA‐seq
CellRegMap: a statistical framework for mapping context‐specific regulatory variants using scRNA‐seq
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CellRegMap: a statistical framework for mapping context‐specific regulatory variants using scRNA‐seq

Cuomo, Anna S E ; Heinen, Tobias ; Vagiaki, Danai ; Horta, Danilo ; Marioni, John C ; Stegle, Oliver

Molecular systems biology, 2022-08, Vol.18 (8), p.e10663-n/a [同儕審閱期刊]

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2
Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
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Field pathogenomics reveals the emergence of a diverse wheat yellow rust population

Hubbard, Amelia ; Lewis, Clare M ; Yoshida, Kentaro ; Ramirez-Gonzalez, Ricardo H ; de Vallavieille-Pope, Claude ; Thomas, Jane ; Kamoun, Sophien ; Bayles, Rosemary ; Uauy, Cristobal ; Saunders, Diane G O

Genome Biology, 2015-02, Vol.16 (1), p.23-23, Article 23 [同儕審閱期刊]

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3
Principles of nucleosome organization revealed by single-cell micrococcal nuclease sequencing
Principles of nucleosome organization revealed by single-cell micrococcal nuclease sequencing
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Principles of nucleosome organization revealed by single-cell micrococcal nuclease sequencing

Lai, Binbin ; Gao, Weiwu ; Cui, Kairong ; Xie, Wanli ; Tang, Qingsong ; Jin, Wenfei ; Hu, Gangqing ; Ni, Bing ; Zhao, Keji

Nature (London), 2018-10, Vol.562 (7726), p.281-285 [同儕審閱期刊]

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4
Single-cell chromatin accessibility reveals principles of regulatory variation
Single-cell chromatin accessibility reveals principles of regulatory variation
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Single-cell chromatin accessibility reveals principles of regulatory variation

Buenrostro, Jason D ; Wu, Beijing ; Litzenburger, Ulrike M ; Ruff, Dave ; Gonzales, Michael L ; Snyder, Michael P ; Chang, Howard Y ; Greenleaf, William J

Nature (London), 2015-07, Vol.523 (7561), p.486-490 [同儕審閱期刊]

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5
Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial
Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial
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Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

Wolf, Jochen B. W.

Molecular ecology resources, 2013-07, Vol.13 (4), p.559-572 [同儕審閱期刊]

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6
Cross-species regulatory sequence activity prediction
Cross-species regulatory sequence activity prediction
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Cross-species regulatory sequence activity prediction

Kelley, David R Ma, Jian

PLoS computational biology, 2020-07, Vol.16 (7), p.e1008050-e1008050 [同儕審閱期刊]

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7
RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions
RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions
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RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

Bonetti, Alessandro ; Agostini, Federico ; Suzuki, Ana Maria ; Hashimoto, Kosuke ; Pascarella, Giovanni ; Gimenez, Juliette ; Roos, Leonie ; Nash, Alex J ; Ghilotti, Marco ; Cameron, Christopher J F ; Valentine, Matthew ; Medvedeva, Yulia A ; Noguchi, Shuhei ; Agirre, Eneritz ; Kashi, Kaori ; Samudyata ; Luginbühl, Joachim ; Cazzoli, Riccardo ; Agrawal, Saumya ; Luscombe, Nicholas M ; Blanchette, Mathieu ; Kasukawa, Takeya ; Hoon, Michiel de ; Arner, Erik ; Lenhard, Boris ; Plessy, Charles ; Castelo-Branco, Gonçalo ; Orlando, Valerio ; Carninci, Piero

Nature communications, 2020-02, Vol.11 (1), p.1018-1018, Article 1018 [同儕審閱期刊]

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8
Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application
Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application
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Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application

Sun, Yu-Meng ; Chen, Yue-Qin

Journal of hematology and oncology, 2020-08, Vol.13 (1), p.109-109, Article 109 [同儕審閱期刊]

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9
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
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Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

Friedman, Nir ; Amit, Ido ; Regev, Aviv ; Rabani, Michal ; Levin, Joshua Z ; Fan, Lin ; Adiconis, Xian ; Raychowdhury, Raktima ; Garber, Manuel ; Gnirke, Andreas ; Nusbaum, Chad ; Hacohen, Nir

Nature biotechnology, 2011-05, Vol.29 (5), p.436-442 [同儕審閱期刊]

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10
FLAM-seq: full-length mRNA sequencing reveals principles of poly(A) tail length control
FLAM-seq: full-length mRNA sequencing reveals principles of poly(A) tail length control
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FLAM-seq: full-length mRNA sequencing reveals principles of poly(A) tail length control

Legnini, Ivano ; Alles, Jonathan ; Karaiskos, Nikos ; Ayoub, Salah ; Rajewsky, Nikolaus

Nature methods, 2019-09, Vol.16 (9), p.879-886 [同儕審閱期刊]

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