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RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions
RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions
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RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

Bonetti, Alessandro ; Agostini, Federico ; Suzuki, Ana Maria ; Hashimoto, Kosuke ; Pascarella, Giovanni ; Gimenez, Juliette ; Roos, Leonie ; Nash, Alex J ; Ghilotti, Marco ; Cameron, Christopher J F ; Valentine, Matthew ; Medvedeva, Yulia A ; Noguchi, Shuhei ; Agirre, Eneritz ; Kashi, Kaori ; Samudyata ; Luginbühl, Joachim ; Cazzoli, Riccardo ; Agrawal, Saumya ; Luscombe, Nicholas M ; Blanchette, Mathieu ; Kasukawa, Takeya ; Hoon, Michiel de ; Arner, Erik ; Lenhard, Boris ; Plessy, Charles ; Castelo-Branco, Gonçalo ; Orlando, Valerio ; Carninci, Piero

Nature communications, 2020-02, Vol.11 (1), p.1018-1018, Article 1018 [Peer Reviewed Journal]

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2
Systematic analysis reveals the prevalence and principles of bypassable gene essentiality
Systematic analysis reveals the prevalence and principles of bypassable gene essentiality
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Systematic analysis reveals the prevalence and principles of bypassable gene essentiality

Li, Jun ; Wang, Hai-Tao ; Wang, Wei-Tao ; Zhang, Xiao-Ran ; Suo, Fang ; Ren, Jing-Yi ; Bi, Ying ; Xue, Ying-Xi ; Hu, Wen ; Dong, Meng-Qiu ; Du, Li-Lin

Nature communications, 2019-03, Vol.10 (1), p.1002-15, Article 1002 [Peer Reviewed Journal]

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3
A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer
A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer
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A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer

Saito, Tomoko ; Niida, Atsushi ; Uchi, Ryutaro ; Hirata, Hidenari ; Komatsu, Hisateru ; Sakimura, Shotaro ; Hayashi, Shuto ; Nambara, Sho ; Kuroda, Yosuke ; Ito, Shuhei ; Eguchi, Hidetoshi ; Masuda, Takaaki ; Sugimachi, Keishi ; Tobo, Taro ; Nishida, Haruto ; Daa, Tsutomu ; Chiba, Kenichi ; Shiraishi, Yuichi ; Yoshizato, Tetsuichi ; Kodama, Masaaki ; Okimoto, Tadayoshi ; Mizukami, Kazuhiro ; Ogawa, Ryo ; Okamoto, Kazuhisa ; Shuto, Mitsutaka ; Fukuda, Kensuke ; Matsui, Yusuke ; Shimamura, Teppei ; Hasegawa, Takanori ; Doki, Yuichiro ; Nagayama, Satoshi ; Yamada, Kazutaka ; Kato, Mamoru ; Shibata, Tatsuhiro ; Mori, Masaki ; Aburatani, Hiroyuki ; Murakami, Kazunari ; Suzuki, Yutaka ; Ogawa, Seishi ; Miyano, Satoru ; Mimori, Koshi

Nature communications, 2018-07, Vol.9 (1), p.2884-11, Article 2884 [Peer Reviewed Journal]

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4
Integration of multiple biological contexts reveals principles of synthetic lethality that affect reproducibility
Integration of multiple biological contexts reveals principles of synthetic lethality that affect reproducibility
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Integration of multiple biological contexts reveals principles of synthetic lethality that affect reproducibility

Ku, Angel A ; Hu, Hsien-Ming ; Zhao, Xin ; Shah, Khyati N ; Kongara, Sameera ; Wu, Di ; McCormick, Frank ; Balmain, Allan ; Bandyopadhyay, Sourav

Nature communications, 2020-05, Vol.11 (1), p.2375-2375, Article 2375 [Peer Reviewed Journal]

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5
GALA: a computational framework for de novo chromosome-by-chromosome assembly with long reads
GALA: a computational framework for de novo chromosome-by-chromosome assembly with long reads
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GALA: a computational framework for de novo chromosome-by-chromosome assembly with long reads

Awad, Mohamed ; Gan, Xiangchao

Nature communications, 2023-01, Vol.14 (1), p.204-204, Article 204 [Peer Reviewed Journal]

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6
Long-term single-cell imaging and simulations of microtubules reveal principles behind wall patterning during proto-xylem development
Long-term single-cell imaging and simulations of microtubules reveal principles behind wall patterning during proto-xylem development
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Long-term single-cell imaging and simulations of microtubules reveal principles behind wall patterning during proto-xylem development

Schneider, René ; Klooster, Kris Van't ; Picard, Kelsey L ; van der Gucht, Jasper ; Demura, Taku ; Janson, Marcel ; Sampathkumar, Arun ; Deinum, Eva E ; Ketelaar, Tijs ; Persson, Staffan

Nature communications, 2021-01, Vol.12 (1), p.669-669, Article 669 [Peer Reviewed Journal]

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7
Design principles of collateral sensitivity-based dosing strategies
Design principles of collateral sensitivity-based dosing strategies
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Design principles of collateral sensitivity-based dosing strategies

Aulin, Linda B S ; Liakopoulos, Apostolos ; van der Graaf, Piet H ; Rozen, Daniel E ; van Hasselt, J G Coen

Nature communications, 2021-09, Vol.12 (1), p.5691-14, Article 5691 [Peer Reviewed Journal]

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8
Molecular principles underlying dual RNA specificity in the Drosophila SNF protein
Molecular principles underlying dual RNA specificity in the Drosophila SNF protein
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Molecular principles underlying dual RNA specificity in the Drosophila SNF protein

Weber, Gert ; DeKoster, Gregory T ; Holton, Nicole ; Hall, Kathleen B ; Wahl, Markus C

Nature communications, 2018-06, Vol.9 (1), p.2220-16, Article 2220 [Peer Reviewed Journal]

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9
Helical reconstruction of VP39 reveals principles for baculovirus nucleocapsid assembly
Helical reconstruction of VP39 reveals principles for baculovirus nucleocapsid assembly
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Helical reconstruction of VP39 reveals principles for baculovirus nucleocapsid assembly

Benning, Friederike M C ; Jenni, Simon ; Garcia, Coby Y ; Nguyen, Tran H ; Zhang, Xuewu ; Chao, Luke H

Nature communications, 2024-01, Vol.15 (1), p.250-250, Article 250 [Peer Reviewed Journal]

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10
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT
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Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT

Paul, Indranil ; Bolzan, Dante ; Youssef, Ahmed ; Gagnon, Keith A ; Hook, Heather ; Karemore, Gopal ; Oliphant, Michael U J ; Lin, Weiwei ; Liu, Qian ; Phanse, Sadhna ; White, Carl ; Padhorny, Dzmitry ; Kotelnikov, Sergei ; Chen, Christopher S ; Hu, Pingzhao ; Denis, Gerald V ; Kozakov, Dima ; Raught, Brian ; Siggers, Trevor ; Wuchty, Stefan ; Muthuswamy, Senthil K ; Emili, Andrew

Nature communications, 2023-02, Vol.14 (1), p.688-688, Article 688 [Peer Reviewed Journal]

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